Sprout is a novel generative model for ChIA-PET data that characterizes physical chromatin interactions and points of contact at high spatial resolution.

GERM is an approach to identifying conditional occupancy events for a protein from ChIA-PET data.

This is the code for our paper at EMNLP 2018, Grounding language acquisition by training semantic parsers using captioned videos. 

Coauthor is a tool for group collaboration, discussion, keeping track of notes/results of meetings, etc. Its primary goal is to ease multiauthor collaboration on unsolved problems in theoretical computer science, so e.g. you'll find LaTeX math support; hopefully it will have applications in other fields too.

Vega is a visualization grammar, a declarative language for creating, saving, and sharing interactive visualization designs. With Vega, you can describe the visual appearance and interactive behavior of a visualization in a JSON format, and generate web-based views using Canvas or SVG.

##GEM software suite This software suite contains several methods for analyzing transcription factor binding and motif using genomic data (GEM, GPS, KMAC, KSM, RMD, etc.) and for discovering chromatin interactions (CID).