Given a database of DNA sequence motifs representing transcription factors and enhancer promoter interaction data, spatzie performs statistical analysis to identify co-enriched transcription factors.

CaBLASTP is a family of programs for performing compressively-accelerated protein sequence searches based on the BLASTP family of tools (including PSI-BLAST and DELTA-BLAST), as well as a compression tool (cablastp-compress) for creating searchable, compressed databases based on an input FASTA file.

Mahimahi is a tool for browser developers that provides accurate measurements when recording and replaying HTTP content over emulated network conditions

Metagenomic binning using low-density hashing a support vector machine

MICA (Metagenomic Inquiry Compressive Acceleration) is a family of programs for performing compressively-accelerated metagenomic sequence searches based on BLASTX and DIAMOND. MICA also includes compressively accelerated versions of the BLASTP family of tools (including PSI-BLAST and DELTA-BLAST), as well as a compression tool (mica-compress) for creating searchable, compressed databases based on an input FASTA file.

Vega is a visualization grammar, a declarative language for creating, saving, and sharing interactive visualization designs. With Vega, you can describe the visual appearance and interactive behavior of a visualization in a JSON format, and generate web-based views using Canvas or SVG.

Matlab and Python toolbox for fast Total Variation proximity operators.